1. Install dependencies

pip install -r requirements.txt

2. Ingest corpus

python main.py --ingest-all

3. Query the Personal Brain

python main.py --query "Why did I move from Drosophila to yeast?"

4. Run the 12 Benchmark Questions

python main.py --benchmark --output-json benchmark_results.json

5. Run Automated Test Suite

python -m unittest tests/test_modules.py