mirbase

Reproducible Bash pipeline for miRNA precursor analysis using miRBase v22 and SeqKit. Filters by organism and gene target, converts RNA→DNA, and exports GC content and length metrics as TSV and Markdown reports. Configurable via CLI args.

Code for generating a sqlite database from miRBase data

A Bio2BEL package for miRBase (http://www.mirbase.org)

miRNA Hybrid Viewer 2 - seed, thermodynamic and null-model analysis of miRNA-mRNA interactions in a single offline HTML file