bactopia

Here are 2 public repositories matching this topic...

mbilal-OU / awesome-microbial-pangenomics

A curated list of software, pipelines, databases, and resources for bacterial and microbial pangenomics.

bioinformatics genomics bioinformatics-pipeline awesome-list microbial-genomics pangenomics pangenome bioinformatics-tool roary bactopia

Updated Aug 31, 2026

Qasim-Hussain-Code / bactopia-bacterial-phyloresistomics-pipeline

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Genomic surveillance workflow coupling clonal lineage assignment, acquired-resistome screening, and maximum-likelihood phylogenetic reconstruction for bacterial pathogen populations.

workflow nfcore bactopia phyloresistomics

Updated Aug 13, 2026
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