Skip to content

Pull requests: nf-core/modules

New pull request New
179 Open 9,083 Closed
179 Open 9,083 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Support save_domtblout in fasta_hmmsearch_rank_fastas
#12772 opened Aug 21, 2026 by erikrikarddaniel Member • Draft
8 of 14 tasks
Migrate custom/pcaclustering, custom/clustermetrics and custom/clustervisualization
#12771 opened Aug 21, 2026 by dbaku42 Contributor Loading…
4 tasks done
@dbaku42
Hyphy meme
#12769 opened Aug 21, 2026 by leapicard Contributor Loading…
11 of 17 tasks
1
5
Update to topic sigprofiler Do not merge yet
#12764 opened Aug 20, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
1
Migrate starfusion/build to topics size/l
#12748 opened Aug 18, 2026 by mribeirodantas Member Loading…
17 tasks
1
@mribeirodantas
16
Add basic subworkflow for unzipping and indexing fasta Ready for Review size/m
#12663 opened Aug 12, 2026 by DLBPointon Contributor Loading…
6
Remove fixed UMI-tools seeds and fix UMICollapse jar discovery Do not merge yet
#12662 opened Aug 12, 2026 by pinin4fjords Member Loading…
3
Add STRAGLR module
#12644 opened Aug 10, 2026 by lukejroche Loading…
2 tasks
1
1
Update to topic qualimap
#12625 opened Aug 7, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
6
Provide .fna support for pbmm2/align
#12602 opened Aug 6, 2026 by stvdsomp Loading…
6 tasks done
4
fix probe-set inclusion assertion size/m
#12601 opened Aug 6, 2026 by fmalmeida Contributor Loading…
1
@fmalmeida
3
Update to topic phyloflash Do not merge yet
#12577 opened Aug 4, 2026 by LouisLeNezet Contributor • Draft
17 tasks
1
@LouisLeNezet
1
Add subworkflow for gridss somatic structural variant calling Ready for Review
#12574 opened Aug 4, 2026 by imsarath Contributor Loading…
14 of 17 tasks
1
@imsarath
8
Swap repeatmodeler to topics conda-fail size/m
#12513 opened Aug 3, 2026 by SPPearce Contributor • Draft
17 tasks
2
Swap repeatmasker to topics conda-fail size/m
#12506 opened Aug 3, 2026 by SPPearce Contributor • Draft
2
updated module: xengsort/index Ready for Review
#12494 opened Aug 2, 2026 by LeonHornich Contributor Loading…
10 of 13 tasks
15
Update nvcr.io/nvidia/tensorflow Docker tag to v20.12 size/xs
#12488 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Update dependency prettier to v3.9.6 size/xs
#12487 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Migrate amulety to topics gpu module uses GPU help wanted Extra attention is needed
#12481 opened Jul 31, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
Migrate universc versions topic container-issue Ready for Review
#12479 opened Jul 31, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
canvas/germline: Added tests and missing inputs, some cleanup Ready for Review
#12462 opened Jul 29, 2026 by Schmytzi Contributor Loading…
9 of 17 tasks
24
Migrate narfmap/hashtable to topic channels
#12445 opened Jul 27, 2026 by xHaMMaDy Contributor Loading…
13 tasks done
1
14
fix(qualimap) Fix for errors in qualimap when memory is set to null
#12441 opened Jul 27, 2026 by bigbigdumdum Loading…
2 of 11 tasks
4
fmhfunprofiler: fix test data and update snapshot size/m
#12417 opened Jul 24, 2026 by nickp60 Contributor Loading…
12 of 17 tasks
1
6
gtffilter: add support for non-Ensembl GTF files
#12393 opened Jul 21, 2026 by kanishkanandhkumar Loading…
3
ProTip! Mix and match filters to narrow down what you’re looking for.