Skip to content
@evotools

evotools

Tools to support the study of genome and epigenome evolution and their relevance to disease.

Popular repositories Loading

  1. nf-LO nf-LO Public

    A Nextflow workflow to generate lift over files for any pair of genomes

    Nextflow 76 12

  2. hapbin hapbin Public

    Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)

    C++ 45 19

  3. CattleGraphGenomePaper CattleGraphGenomePaper Public

    Set of script for the paper on the cattle graph genome

    Shell 14 1

  4. nSPECTRa nSPECTRa Public

    Nextflow workflow to compute the mutation spectra

    Nextflow 5

  5. wBuffaloVsCow wBuffaloVsCow Public

    Code accompanying manuscript "Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication"

    R 3 1

  6. CattleOManalyses CattleOManalyses Public

    Script and some results from the Optical mapping SV analyses

    Shell 1

Repositories

Showing 10 of 16 repositories
  • nSPECTRa Public

    Nextflow workflow to compute the mutation spectra

    evotools/nSPECTRa's past year of commit activity
    Nextflow 5 MIT 0 0 1 Updated Sep 2, 2026
  • nf-LO Public

    A Nextflow workflow to generate lift over files for any pair of genomes

    evotools/nf-LO's past year of commit activity
    Nextflow 76 MIT 12 0 1 Updated Aug 26, 2026
  • SuRE-paper-codes Public

    Codes for the SuRE MPRA paper

    evotools/SuRE-paper-codes's past year of commit activity
    0 0 0 0 Updated Jul 8, 2026
  • SuRE-sequence-processes Public
    evotools/SuRE-sequence-processes's past year of commit activity
    Python 0 0 0 0 Updated Jul 7, 2026
  • SuRE-gg-variants Public

    Genome graph-based analysis of regulatory variants in SuRE MPRA data

    evotools/SuRE-gg-variants's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jun 23, 2026
  • bovreg-twas-suite Public

    bovreg-twas-suite is a modular Nextflow pipeline suite for performing transcriptome-wide association studies (TWAS) in cattle. It includes workflows to generate imputed genotypes and expression inputs from RNA-seq data for model training, and to run TWAS using trained models to map trait-associated genes.

    evotools/bovreg-twas-suite's past year of commit activity
    Nextflow 0 0 0 0 Updated Apr 17, 2026
  • EvaReg-training Public

    Training code for EvaReg models

    evotools/EvaReg-training's past year of commit activity
    Python 0 0 0 0 Updated Apr 9, 2026
  • EvaReg-analysis Public

    All codes related to analysis of EvaReg models

    evotools/EvaReg-analysis's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 9, 2026
  • nf-VarAnno Public

    A cross-species variant annotation pipeline based on Nextflow

    evotools/nf-VarAnno's past year of commit activity
    Python 1 1 0 0 Updated Mar 18, 2025
  • CattleGraphGenomePaper Public

    Set of script for the paper on the cattle graph genome

    evotools/CattleGraphGenomePaper's past year of commit activity
    Shell 14 1 0 0 Updated Jan 10, 2023
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…