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Merged
ChikithRishi merged 2 commits into from
Aug 26, 2026
Merged

Pipeline #68

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6d7777a
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Aug 26, 2026
b53b475
Merge branch 'Pipeline' of https://github.com/appn-anu/hyperkey into …
Aug 26, 2026
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146 changes: 73 additions & 73 deletions scripts/workflow.py
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Original file line number Diff line number Diff line change
Expand Up @@ -124,79 +124,79 @@ def run_pipeline(
# 1. Heatmap
# ---------------------------
print("\nRunning visualise_heatmap.py ...")
# from visualise_heatmap import main as heatmap_main

# heatmap_arguments = {
# "input_path": output_csv,
# "output_name": heatmap_output_name,
# "dark_mode": dark_mode,
# }

# if raw_location_path is not None:
# heatmap_arguments["raw_location_path"] = raw_location_path

# heatmap_main(**heatmap_arguments)
# completed_stages.append("heatmap")
# print("visualise_heatmap.py completed successfully.")

# # ---------------------------
# # 2. Spectral Measurement Graph
# # ---------------------------
# print("\nRunning visualise_measurement.py ...")
# from visualise_measurement import main as measurement_main

# measurement_main(
# input_path=output_csv,
# output_name=spectral_graph_output_name,
# dark_mode=dark_mode,
# )
# completed_stages.append("spectral_graph")
# print("visualise_measurement.py completed successfully.")

# # ---------------------------
# # 3. Outlier Analysis (optional)
# # ---------------------------
# if outlier_analysis:
# print("\nRunning outlier_analysis.py ...")
# from outlier_analysis import main as outlier_main

# effective_outlier_settings = _resolve_outlier_settings(
# outlier_settings
# )

# outlier_main(
# input_path=output_csv,
# output_path=outlier_output_name,
# **effective_outlier_settings,
# )
# completed_stages.append("outlier_analysis")
# print("outlier_analysis.py completed successfully.")
# else:
# print(
# "\nOutlier analysis not requested. "
# "Skipping outlier_analysis.py."
# )

# # ---------------------------
# # 4. Report
# # ---------------------------
# print("\nRunning report.py ...")
# from report import main as report_main

# report_main(
# dark_mode=dark_mode,
# summary_path=summary_path,
# report_markdown_path=report_markdown_path,
# report_html_path=report_html_path,
# report_pdf_path=report_pdf_path,
# heatmap_output_name=heatmap_output_name,
# spectral_graph_output_name=spectral_graph_output_name,
# outlier_output_name=(
# outlier_output_name if outlier_analysis else None
# ),
# )

# completed_stages.append("report")
from visualise_heatmap import main as heatmap_main

heatmap_arguments = {
"input_path": output_csv,
"output_name": heatmap_output_name,
"dark_mode": dark_mode,
}

if raw_location_path is not None:
heatmap_arguments["raw_location_path"] = raw_location_path

heatmap_main(**heatmap_arguments)
completed_stages.append("heatmap")
print("visualise_heatmap.py completed successfully.")

# ---------------------------
# 2. Spectral Measurement Graph
# ---------------------------
print("\nRunning visualise_measurement.py ...")
from visualise_measurement import main as measurement_main

measurement_main(
input_path=output_csv,
output_name=spectral_graph_output_name,
dark_mode=dark_mode,
)
completed_stages.append("spectral_graph")
print("visualise_measurement.py completed successfully.")

# ---------------------------
# 3. Outlier Analysis (optional)
# ---------------------------
if outlier_analysis:
print("\nRunning outlier_analysis.py ...")
from outlier_analysis import main as outlier_main

effective_outlier_settings = _resolve_outlier_settings(
outlier_settings
)

outlier_main(
input_path=output_csv,
output_path=outlier_output_name,
**effective_outlier_settings,
)
completed_stages.append("outlier_analysis")
print("outlier_analysis.py completed successfully.")
else:
print(
"\nOutlier analysis not requested. "
"Skipping outlier_analysis.py."
)

# ---------------------------
# 4. Report
# ---------------------------
print("\nRunning report.py ...")
from report import main as report_main

report_main(
dark_mode=dark_mode,
summary_path=summary_path,
report_markdown_path=report_markdown_path,
report_html_path=report_html_path,
report_pdf_path=report_pdf_path,
heatmap_output_name=heatmap_output_name,
spectral_graph_output_name=spectral_graph_output_name,
outlier_output_name=(
outlier_output_name if outlier_analysis else None
),
)

completed_stages.append("report")
print("report.py completed successfully.")

except Exception as error:
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