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@VCU-Bioinformatics-Core

VCU Bioinformatics Core

Codebase for bioinformatics pipelines belonging to the VCU Bioinformatics Core.

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  1. bioinformatics-epicenter-pipelines bioinformatics-epicenter-pipelines Public

    Pipeline to process data directly for the VCU bioinformatics website

    Python

Repositories

Showing 9 of 9 repositories
  • bulk_rnaseq_analyses Public

    VCU BISR pipelines for processing bulk RNA-seq data.

    VCU-Bioinformatics-Core/bulk_rnaseq_analyses's past year of commit activity
    HTML 0 GPL-3.0 0 1 0 Updated Sep 3, 2026
  • 20241011.kevin_byrd.ibd_nulisa Public
    VCU-Bioinformatics-Core/20241011.kevin_byrd.ibd_nulisa's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 4, 2026
  • proteomics_core_pipelines Public

    Pipelines that we are building in collaboration with the proteomics core

    VCU-Bioinformatics-Core/proteomics_core_pipelines's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated May 19, 2026
  • nf-core-scrnaseq Public template

    template repository for the execution of nf-core/scrnaseq pipeline on VCU Apollo Server.

    VCU-Bioinformatics-Core/nf-core-scrnaseq's past year of commit activity
    Shell 0 0 0 0 Updated Apr 6, 2026
  • pylimma Public

    Python implementation of the limma linear-models-for-omics pipeline (lmFit, eBayes, topTable) with pingouin for multiple-testing correction

    VCU-Bioinformatics-Core/pylimma's past year of commit activity
    Python 1 0 0 0 Updated Mar 25, 2026
  • nf-core-atacseq Public

    template repository for the execution of nf-core/scrnaseq pipeline on VCU Apollo Server.

    VCU-Bioinformatics-Core/nf-core-atacseq's past year of commit activity
    Shell 0 0 0 0 Updated Jan 15, 2026
  • nf-core-rnaseq Public template
    VCU-Bioinformatics-Core/nf-core-rnaseq's past year of commit activity
    Shell 0 0 0 0 Updated Nov 18, 2025
  • bioinformatics-epicenter-pipelines Public

    Pipeline to process data directly for the VCU bioinformatics website

    VCU-Bioinformatics-Core/bioinformatics-epicenter-pipelines's past year of commit activity
    Python 0 0 1 0 Updated Oct 29, 2025
  • vcu-bioinformatics-core.github.io Public

    BISR Documentation Repo

    VCU-Bioinformatics-Core/vcu-bioinformatics-core.github.io's past year of commit activity
    0 0 0 0 Updated Mar 11, 2025

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