feat: allow canonical regulatory approvals

[SkyeAv]

Adds support for the canonical Biolink regulatory_approvals slot introduced by Biolink PR #1814 and removes the current Tablassert-specific handling of the legacy FDA-prefixed spelling.

Canonical Slot Override

• Class-scoped grant: Adds regulatory_approvals to CLASS_FIELD_OVERRIDES only for EntityToDiseaseAssociation and EntityToPhenotypicFeatureAssociation.
• Allow-list plumbing: Includes explicit class override grants in ALLOWED_EDGE_FIELDS without adding a global arbitrary-field allowance or TABLASERT_EDGE_EXTRAS entry.
• Validation boundary: Preserves class-specific pruning, installed-model validation, unrelated-class rejection, and unknown-field handling.

Legacy Compatibility Removal

• Current surfaces: Removes explicit FDA_regulatory_approvals references from src/, tests/, and docs/.
• Dynamic model behavior: Keeps legitimate fields dynamically derived from the installed biolink-model; no broad compatibility allow-list was added.
• Dependency caveat: The current environment uses biolink-model 4.4.4, which predates the upstream renamed slot. The explicit class-scoped grant bridges that dependency gap until the renamed slot reaches PyPI.

Regression Coverage and Docs

• Pipeline behavior: Verifies category_override retention for both target classes, split_by conversion of pipe-delimited values into arrays, and _pruned_by_class evidence for ungranted classes.
• Negative behavior: Retains rejection of unrelated class fields and arbitrary unknown fields.
• Documentation: Updates docs/configuration/table.md with canonical spelling, class-scoped override guidance, and array encoding via split_by.

Testing

• uv run --extra qc --extra agent pytest -q → 1408 passed, 3 skipped
• make check → passed
• uv run ruff check . → passed
• uv run ruff format --check . → 88 files already formatted
• uv run pyright → 0 errors, 0 warnings, 0 informations
• if rg -n 'FDA_regulatory_approvals' src tests docs; then exit 1; fi → passed
• Independent full-change audit → approved

[coderabbitai]

Important

• 🔍 Trigger review

This repository does not receive automatic reviews because it has fewer than 10 stars.

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Advanced

Run ID: 137dae3f-af40-4331-a7f8-6e232533af76

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands.}