chore(deps): bump urllib3 from 2.2.3 to 2.6.3

.markdownlint.yaml

@@ -22,3 +22,8 @@ MD024:
   siblings_only: true
 
 MD038: false
+
+# MD060/table-column-style
+# Disabled: emoji columns have inconsistent display width vs character
+# count, making "aligned" pipe style unachievable by hand.
+MD060: false

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
       - id: check-yaml
         stages: [pre-commit]
@@ -13,22 +13,28 @@ repos:
         stages: [pre-commit]
 
   - repo: https://github.com/abravalheri/validate-pyproject
-    rev: v0.24.1
+    rev: v0.25
     hooks:
       - id: validate-pyproject
 
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.4.1
+    rev: v2.4.3
     hooks:
       - id: codespell
 
-  - repo: https://github.com/igorshubovych/markdownlint-cli
-    rev: v0.45.0
+  - repo: https://github.com/DavidAnson/markdownlint-cli2
+    rev: v0.23.2
     hooks:
-      - id: markdownlint-fix
+      - id: markdownlint-cli2
+        exclude: ^\.claude/
+
+  - repo: https://github.com/fastai/nbdev
+    rev: 3.3.11
+    hooks:
+      - id: nbdev-clean
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.12.2
+    rev: v0.16.2
     hooks:
       - id: ruff-check
         args: [--fix, --exit-non-zero-on-fix]

Justfile

@@ -24,7 +24,8 @@ get-started: pre-install venv
 
 # Update project software versions in requirements
 update-reqs:
-    uv lock
+    uv lock --upgrade
+    uv sync
     pre-commit autoupdate
 
 # create virtual environment
@@ -33,9 +34,6 @@ venv:
     uv tool install pre-commit
     uv run pre-commit install
 
-activate-venv:
-    uv shell
-
 # launch jupyter lab
 lab:
     uv run jupyter lab
@@ -66,15 +64,15 @@ lint-sql:
 
 # Format all markdown and config files
 fmt-markdown:
-    uv run mdformat .
+    markdownlint-cli2 --config {{ justfile_directory() }}/.markdownlint.yaml "**/*.{md,qmd}" "#.venv" --fix
 
 # Format a single markdown file, "f"
 fmt-md f:
-    uv run mdformat {{ f }}
+    markdownlint-cli2 --config {{ justfile_directory() }}/.markdownlint.yaml {{ f }} --fix
 
 # Check format of all markdown files
 fmt-check-markdown:
-    uv run mdformat --check .
+    markdownlint-cli2 --config {{ justfile_directory() }}/.markdownlint.yaml "**/*.{md,qmd}" "#.venv"
 
 fmt-all: lint-py fmt-python lint-sql fmt-markdown
 
@@ -85,13 +83,13 @@ pre-commit-run:
 [windows]
 pre-install:
     winget install Casey.Just astral-sh.uv GitHub.cli Posit.Quarto OpenJS.NodeJS
-    npm install -g markdownlint-cli
+    npm install -g markdownlint-cli2
 
 [linux]
 pre-install:
-    brew install just uv gh markdownlint-cli
+    brew install just uv gh markdownlint-cli2
 
 [macos]
 pre-install:
-    brew install just uv gh markdownlint-cli
+    brew install just uv gh markdownlint-cli2
     brew install --cask quarto

README.md

@@ -18,10 +18,10 @@ should also have Git installed
 To get started, make sure you have `Just` installed on your computer by running the
 following from the command line:
 
-| Platform  | Commands                                                            |
-| --------- | ------------------------------------------------------------------- |
+| Platform  | Commands                                                                 |
+| --------- | ------------------------------------------------------------------------ |
 | Windows   | `winget install Git.Git Casey.Just astral-sh.uv GitHub.cli Posit.Quarto` |
-| Mac/Linux | `brew install just uv gh`                                          |
+| Mac/Linux | `brew install just uv gh`                                                |
 
 This will make sure that you have the latest version of `Just`, as well as
 [uv](https://docs.astral.sh/uv/) (installer for Python) and

pyproject.toml

@@ -16,12 +16,8 @@ dependencies = [
 ]
 
 
-[tool.uv]
-dev-dependencies = [
-    "codespell>=2.4.1",
-    "pre-commit>=4.2.0",
-    "ruff>=0.7.4",
-]
+[dependency-groups]
+dev = ["codespell>=2.4.1", "pre-commit>=4.2.0", "ruff>=0.7.4"]
 
 [tool.ruff]
 line-length = 88