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chore: nightly skills sync - #26

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@github-actions github-actions Bot commented Aug 5, 2026

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Automated skills sync

Components updated:

  • KERMT
  • Proteina-Complexa
  • aggregate payload
  • compliance backfill
  • nvMolKit

Cards backfilled from compliance.d (upstream still owes a skill-card.md):

  • open-models-skills/proteina-complexa/complexa-setup
  • open-models-skills/proteina-complexa/complexa-sweep
  • open-models-skills/proteina-complexa/complexa-design
  • open-models-skills/proteina-complexa/complexa-target
  • open-models-skills/proteina-complexa/complexa-evaluate-pdbs

Upstream now ships its own card — delete these compliance.d entries:

  • compliance.d/open-models-skills/kermt/kermt-setup/skill-card.md
  • compliance.d/open-models-skills/kermt/kermt-embed/skill-card.md
  • compliance.d/open-models-skills/kermt/kermt-finetune/skill-card.md
  • compliance.d/open-models-skills/kermt/kermt-infer/skill-card.md
  • compliance.d/open-models-skills/kermt/kermt-pretrain-scratch/skill-card.md
  • compliance.d/open-models-skills/kermt/kermt-monitor/skill-card.md
  • compliance.d/open-models-skills/kermt/kermt-add-cmim-pretrain/skill-card.md
  • compliance.d/open-models-skills/kermt/kermt-continue-pretrain/skill-card.md
  • compliance.d/library-skills/nvmolkit-usage/skill-card.md

Sourced content changes + any pruning are shown in the diff. Native
skills (NIM, workflows, parabricks, genomics, cuEquivariance) are untouched.
Review the diff and merge — nothing merges unattended.

@github-actions
github-actions Bot force-pushed the automated/sync-skills branch 4 times, most recently from 1bb02b0 to bda76c4 Compare August 13, 2026 07:33
@greptile-apps

greptile-apps Bot commented Aug 13, 2026

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RetriggerConfidence Score: 3/5

The PR is not yet safe to merge because the complexa-sweep documentation map remains broken and the nvMolKit signature bundle cannot be verified.

Findings

  1. P1 Signature resources do not match
  2. P2 Documentation map links are broken

Summary

The automated sync updates KERMT, Proteina-Complexa, and nvMolKit skill content and refreshes aggregate copies and compliance cards.

  • Adds nvMolKit MCS, minimizer, clustering, and evaluation guidance.
  • Synchronizes Proteina-Complexa skill documentation and metadata into both source and aggregate paths.
  • Backfills or replaces skill cards for synced components.

Reviews (9) · Last reviewed commit: "chore: sync skills from source repos"

Comment on lines +6 to +9
> - Running a design? See [Inference Guide](INFERENCE.md)
> - Tuning YAML configs? See [Configuration Guide](CONFIGURATION_GUIDE.md)
> - Understanding metrics? See [Evaluation Guide](EVALUATION_METRICS.md)
> - Search metadata? See [Search Metadata](SEARCH_METADATA.md)

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P2 Documentation map links are broken

The new links to INFERENCE.md, CONFIGURATION_GUIDE.md, EVALUATION_METRICS.md, and SEARCH_METADATA.md resolve relative to this directory, but none of those files exists. Readers following the documentation map therefore receive file-not-found errors instead of the promised guidance; the mirrored plugin file contains the same broken links.

@github-actions
github-actions Bot force-pushed the automated/sync-skills branch 3 times, most recently from 3a5f680 to 43368d0 Compare August 21, 2026 07:19
@github-actions
github-actions Bot force-pushed the automated/sync-skills branch 2 times, most recently from 89aa260 to 8af329a Compare August 27, 2026 10:21
@github-actions
github-actions Bot force-pushed the automated/sync-skills branch from 8af329a to 957ca54 Compare September 5, 2026 07:11
@@ -0,0 +1 @@
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P1 Signature resources do not match

The new signature bundle records SKILL.md with SHA-256 31375d..., but the current file hashes to 39ec45.... It also requires a BENCHMARK.md that is absent from this directory. Consumers verifying this skill against the bundle will reject it because the signed resources are missing or do not match.

@github-actions
github-actions Bot force-pushed the automated/sync-skills branch from 957ca54 to 8d3e11f Compare September 11, 2026 07:13
@github-actions
github-actions Bot force-pushed the automated/sync-skills branch from 8d3e11f to 11a4317 Compare September 15, 2026 07:15
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