Maize Update - #321

Merged

asherpasha merged 44 commits into

Jun 17, 2026

Commits on Mar 23, 2026

Revert "Update master branch"

asherpasha
authored and
rmobmina
committed
6b5f2be
edited microarray and added 2 new endpoints and created efp_proxy endpoints
rmobmina
committed
3a00428
dynamic ORMs
rmobmina
committed
47e0ded
tried to fix to pass
rmobmina
committed
199dc91
Add fail-fast: false to see all Python test results
rmobmina
committed
d4b97be
Add Sphinx/reST docstrings to dynamic ORM functions
rmobmina
committed
26e4f0f
comment style
rmobmina
committed
4173f8e
Add Q&A reference guide for supervisor meetings
rmobmina
committed
6da9573
Add guide explaining schema definition vs database creation
rmobmina
committed
800c9ec
Add BARUtils validation, Sphinx docstrings, and fix SQL injection
rmobmina
committed
d7291f9
got rid of inaccurate markdown files
rmobmina
committed
510e7b0
Fix flake8 linting errors
rmobmina
committed
eecb4c8
flake8 ran
rmobmina
committed
358ede2
Fix dynamic eFP query fallback for CI mirrors
rmobmina
committed
ff50982
fixed syntax error
rmobmina
committed
52a2def
Refactor EFP services and simplify schema definitions
rmobmina
committed
2b8daef
Fix missing length fields for string-type QA columns
rmobmina
committed
51bca30
Add DB_HOST environment variable for Docker MySQL connection
rmobmina
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e185e62
Handle external API errors gracefully in ATTED proxy
rmobmina
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ab21999
Revert proxy changes - external API issue unrelated to EFP work
rmobmina
committed
eca92c7
fixed?
rmobmina
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c4741ad
fixed comments
rmobmina
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e8411ee
added new schemas
rmobmina
committed
45d2a6d
should pass all checks?
rmobmina
committed
a5d07a8
Fix TEXT columns in primary keys causing MySQL error
rmobmina
committed
c03ef25
checkcheck
rmobmina
committed
b4d54c1
cleaned flake
rmobmina
committed
e09790f
passed?
rmobmina
committed
77bbf7d
updated schema
rmobmina
committed
22f1dae
fixed metadata
rmobmina
committed
b81db62
set VARCHAR to 255
rmobmina
committed
2271479
removed POST from efp proxy and simplified endpoints to a single one
rmobmina
committed
e5ace17
add SQL Alchemy binds
rmobmina
committed
9145384
Deleted some unused files, renamed efp proxy to gene_expression
rmobmina
committed
270a40b
fixed naming error
rmobmina
committed
2c4ef4a
restore bootstrap_simple_efp_dbs.py and efp_bootstrap.py needed for CI
rmobmina
committed
fda1648
add gene ID detection and probeset conversion utilities for eFP expression endpoint
rmobmina
committed
a2aa164

Commits on Apr 3, 2026

Commits on Jun 2, 2026

Added maize v5
asherpasha
committed
0538915
Dependancies updated.
asherpasha
committed
3dcd726
Merge pull request #320 from asherpasha/dev
asherpasha
authored
d6eb732