package.json

{
  "name": "reactome",
  "version": "0.0.0",
  "scripts": {
    "ng": "ng",
    "prepare-env": "cd projects/pathway-browser && rm -f ./package-lock.json && node ./foamtree_version_control.js && cd ../.. && npm install",
    "generate:indices": "npx tsx projects/website-angular/src/scripts/generate-index.ts",
    "stage:content": "npx tsx projects/website-angular/src/scripts/stage-content.ts",
    "check:nav-options": "npx tsx projects/website-angular/src/scripts/check-nav-options.ts",
    "dev:reactome-cytoscape-style": "ng build reactome-cytoscape-style --watch --configuration development",
    "dev:serve": "wait-on dist/reactome-cytoscape-style/assets/index.scss && tinacms dev --rootPath projects/website-angular -c \"ng serve\"",
    "dev:serve:local": "wait-on dist/reactome-cytoscape-style/assets/index.scss && tinacms dev --rootPath projects/website-angular -c \"ng serve --configuration development\"",
    "build:reactome-cytoscape-style": "ng build reactome-cytoscape-style",
    "build:libs": "ng build reactome-cytoscape-style && ng build ngx-reactome-style && ng build reactome-table && ng build reactome-gsa-form",
    "start": "npm run generate:indices && npm run stage:content && npm run build:libs && run-p dev:reactome-cytoscape-style dev:serve",
    "start:local": "npm run generate:indices && run-p dev:reactome-cytoscape-style dev:serve:local",
    "start:simple": "ng serve",
    "start:curator-local": "npm run generate:indices && npm run stage:content && npm run build:reactome-cytoscape-style && npm run build:libs && ng serve --configuration curator-local",
    "start:curator": "npm run generate:indices && npm run stage:content && npm run build:reactome-cytoscape-style && npm run build:libs && ng serve --configuration curator",
    "start:simple:local": "ng serve --configuration development",
    "start:website": "cd projects/website-angular && npm run start",
    "start:pathway": "cd projects/pathway-browser && npm run start-with-deps",
    "build": "npm run build:libs && npm run generate:indices && npm run stage:content && ng build --configuration production",
    "build:curator": "npm run build:libs && npm run generate:indices && npm run stage:content && ng build --configuration production,curator",
    "build:website": "npm run build:curator && cd dist/reactome/browser/ && tar czvf browser.tar * && scp browser.tgz curator:~/browser.tgz && rm browser.tar",
    "build:pathway": "cd projects/pathway-browser && npm run build",
    "watch": "ng build --watch --configuration development",
    "test": "vitest run",
    "test:watch": "vitest",
    "e2e": "playwright test --project=code",
    "e2e:ui": "playwright test --ui",
    "serve:ssr:website": "node dist/website-angular/server/server.mjs",
    "serve:prod": "node projects/website-angular/src/scripts/serve-prod.js",
    "build:watch": "ng build reactome --configuration production --watch --delete-output-path false",
    "lint": "eslint .",
    "lint:fix": "eslint . --fix",
    "check:lint": "node scripts/check-lint.mjs",
    "check:dead": "node scripts/check-dead-code.mjs",
    "dead": "knip",
    "format": "prettier --write .",
    "format:check": "prettier --check .",
    "prepare": "husky",
    "import:news": "npx tsx projects/website-angular/src/scripts/import-news.ts",
    "e2e:release": "playwright test --project=release",
    "preflight": "bash scripts/preflight.sh",
    "deployed": "bash scripts/deployed.sh",
    "check:types": "node scripts/check-types.mjs"
  },
  "private": true,
  "dependencies": {
    "@angular/cdk": "^21.2.14",
    "@angular/common": "^21.2.20",
    "@angular/compiler": "^21.2.20",
    "@angular/core": "^21.2.20",
    "@angular/elements": "^21.2.20",
    "@angular/forms": "^21.2.20",
    "@angular/localize": "21.2.20",
    "@angular/material": "21.2.14",
    "@angular/platform-browser": "^21.2.20",
    "@angular/platform-browser-dynamic": "^21.2.20",
    "@angular/router": "^21.2.20",
    "@angular/ssr": "^21.2.21",
    "@carrotsearch/foamtree": "^3.6.0-rc1",
    "@hakimio/ngx-google-analytics": "^15.0.0",
    "@lottiefiles/dotlottie-web": "^0.49.0",
    "@ngneat/until-destroy": "^10.0.0",
    "@ngrx/component": "^21.1.1",
    "@ngrx/component-store": "^21.1.1",
    "@ngrx/effects": "^21.1.1",
    "@ngrx/entity": "^21.1.1",
    "@ngrx/operators": "^21.1.1",
    "@ngrx/router-store": "^21.1.1",
    "@ngrx/store": "^21.1.1",
    "@swissprot/rhea-reaction-viz-test": "^0.0.25",
    "angular-split": "^20.0.0",
    "canvas-to-svg": "^1.0.3",
    "chroma-js": "^3.1.2",
    "cytoscape": "git+https://github.com/reactome/cytoscape.js.git#svg-export-dist",
    "cytoscape-fcose": "^2.2.0",
    "cytoscape-layers": "^3.0.0",
    "express": "4.22.2",
    "fflate": "0.8.2",
    "gifenc": "1.0.3",
    "immer": "^10.2.0",
    "marked": "^17.0.1",
    "minisearch": "^7.2.0",
    "ng-table-virtual-scroll": "^1.6.1",
    "ngrx-wieder": "^16.0.0",
    "ngx-custom-material-file-input": "^21.0.3",
    "ngx-ui-tour-md-menu": "^16.0.0",
    "react-dnd": "^16.0.1",
    "react-dnd-html5-backend": "^16.0.1",
    "reactome-cytoscape-style": "^0.0.2",
    "rxjs": "~7.8.0",
    "svg-pan-zoom": "^3.6.1",
    "svgcanvas": "^2.6.0",
    "swagger-ui-dist": "^5.32.0",
    "tinacms": "^3.12.0",
    "tslib": "^2.3.0",
    "vectorious": "^6.1.12"
  },
  "overrides": {
    "cytoscape": "git+https://github.com/reactome/cytoscape.js.git#svg-export-dist"
  },
  "devDependencies": {
    "@analogjs/vite-plugin-angular": "^2.3.1",
    "@analogjs/vitest-angular": "^2.3.1",
    "@angular-devkit/build-angular": "^21.2.21",
    "@angular/cli": "^21.2.21",
    "@angular/compiler-cli": "^21.2.20",
    "@eslint/js": "^10.0.1",
    "@playwright/test": "1.62.1",
    "@tinacms/cli": "2.6.0",
    "@types/chroma-js": "^3.1.1",
    "@types/cytoscape-fcose": "^2.2.4",
    "@types/lodash": "^4.14.202",
    "angular-eslint": "^21.4.0",
    "concat": "^1.0.3",
    "eslint": "^10.8.1",
    "fs-extra": "^11.4.0",
    "husky": "^9.1.7",
    "jsdom": "^29.0.0",
    "knip": "^6.32.2",
    "lint-staged": "^17.3.0",
    "ng-packagr": "^21.2.7",
    "npm-run-all": "^4.1.1",
    "prettier": "^3.9.6",
    "typescript": "~5.9.3",
    "typescript-eslint": "^8.67.0",
    "vite-tsconfig-paths": "^6.1.1",
    "vitest": "3.2.7",
    "wait-on": "^8.0.1"
  },
  "engines": {
    "node": ">=22"
  },
  "lint-staged": {
    "*.{ts,js,mjs,html,scss,css,json,md,yml,yaml}": [
      "prettier --write"
    ],
    "*.{ts,html}": [
      "eslint --no-warn-ignored"
    ]
  }
}