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Improve reading of CSV files #16

Description

@Mibblez

Summary

  • Update reading of CSV files to use pandas.read_csv() so that large CSVs don't cause python to explode
  • get_plotting_data.py -> SpatialCsvData.from_csv() has a mostly complete implementation. Base work off of that
  • Work to be done in branch update-FileReading
  • Make a new venv and make sure you're using python 3.11

TODO

  • get_plotting_data.py -> SpatialCsvData.from_csv()
    • Throw error when CSV is empty
    • Throw error when header does not contain necessary columns (maybe use plotting_helper.py -> check_aedat_csv_format())
    • Update tests accordingly
  • get_plotting_data.py -> read_aedat_csv
    • Update CSV reading to use pandas.read_csv()
    • Update camera type handling to be similar to SpatialCsvData.from_csv()
  • event_density.py -> main()
    • Update CSV reading to use pandas.read_csv()
  • spike_graph.py -> get_activity_area()
    • Update CSV reading to use pandas.read_csv()
  • process_CSV.py -> process_csv_files()
    • Update CSV reading to use pandas.read_csv()
  • extract_pgm.py -> main()
    • Update CSV reading to use pandas.read_csv()

Activity

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