runDataProcessing("data/Shigella_flexneri/")
Error in runDataProcessing():
! No provenance manifest found for: /Users/jravilab/Documents/GitHub/amR_data/data/Shigella_flexneri
Run prepareGenomes() first or provide a dataset with an existing manifest.
The manifest detection in runDataProcessing() needs to be modified when prepareGenomes() is run in a directory that already has DuckDB prepared and genomes already downloaded. so, prepareGenomes() ends with a
No genomes downloaded.
NULL
The manifest detection in
runDataProcessing()needs to be modified whenprepareGenomes()is run in a directory that already has DuckDB prepared and genomes already downloaded. so,prepareGenomes()ends with a