From c2d39f9e840c855850b1acf3840fbdc6288c23be Mon Sep 17 00:00:00 2001 From: harryswift01 Date: Mon, 7 Sep 2026 13:24:27 +0100 Subject: [PATCH 1/3] chore: add initial contributors and authors to `CITATION.cff` --- CITATION.cff | 39 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/CITATION.cff b/CITATION.cff index 5ed8a20..1f2d74d 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -9,6 +9,45 @@ message: >- type: software authors: + - given-names: Craig + family-names: Benham + email: 'cjbenham@ucdavis.edu' + affiliation: 'UC Davis Genome Center and Department of Mathematics, University of California, Davis, CA 95616, USA.' + affiliation: 'https://orcid.org/0009-0005-4610-2402' + - given-names: Richard M. + family-names: Fye + - given-names: James + family-names: Gebbie-Rayet + email: james.gebbie@stfc.ac.uk + affiliation: 'Scientific Computing Department, STFC Daresbury Laboratory, Warrington WA4 4AD, United Kingdom' + orcid: 'https://orcid.org/0000-0001-8271-3431' + - given-names: Sarah + family-names: Harris + email: sarah.harris@sheffield.ac.uk + affiliation: School of Mathematical and Physical Sciences, University of Sheffield, United Kingdom + orcid: 'https://orcid.org/0000-0002-2812-1651' + - given-names: Jas + family-names: Kalayan + email: jas.kalayan@stfc.ac.uk + affiliation: 'Scientific Computing Department, STFC Daresbury Laboratory, Warrington WA4 4AD, United Kingdom' + orcid: 'https://orcid.org/0000-0002-6833-1864' + - given-names: Sally + family-names: Madden + affiliation: 'UC Davis Genome Center and Department of Mathematics, University of California, Davis, CA 95616, USA.' + - given-names: Harry + family-names: Swift + email: harry.swift@stfc.ac.uk + affiliation: 'Scientific Computing Department, STFC Daresbury Laboratory, Warrington WA4 4AD, United Kingdom' + orcid: 'https://orcid.org/0009-0007-3323-753X' + - given-names: Victor + family-names: Velasco-Berrelleza + email: v.velascoberrelleza@sheffield.ac.uk + affiliation: 'School of Mathematical and Physical Sciences, University of Sheffield, United Kingdom' + orcid: 'https://orcid.org/0000-0002-4809-6254' + - given-names: Dina + family-names: Zhabinskaya + email: dzhabinskaya@ucdavis.edu + affiliation: 'UC Davis Genome Center and Department of Mathematics, University of California, Davis, CA 95616, USA.' repository-code: 'https://github.com/CCPBioSim/SIST' url: 'https://sist.readthedocs.io/en/latest/' From 3b7367aa2276676bfa2421c6695e3a13a53364a0 Mon Sep 17 00:00:00 2001 From: harryswift01 Date: Mon, 7 Sep 2026 13:29:18 +0100 Subject: [PATCH 2/3] chore: reorder authors in `CITATION.cff` by contribution --- CITATION.cff | 50 +++++++++++++++++++++++++------------------------- 1 file changed, 25 insertions(+), 25 deletions(-) diff --git a/CITATION.cff b/CITATION.cff index 1f2d74d..40cb879 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -14,40 +14,40 @@ authors: email: 'cjbenham@ucdavis.edu' affiliation: 'UC Davis Genome Center and Department of Mathematics, University of California, Davis, CA 95616, USA.' affiliation: 'https://orcid.org/0009-0005-4610-2402' + - given-names: Dina + family-names: Zhabinskaya + email: dzhabinskaya@ucdavis.edu + affiliation: 'UC Davis Genome Center and Department of Mathematics, University of California, Davis, CA 95616, USA.' + - given-names: Sally + family-names: Madden + affiliation: 'UC Davis Genome Center and Department of Mathematics, University of California, Davis, CA 95616, USA.' - given-names: Richard M. family-names: Fye - - given-names: James - family-names: Gebbie-Rayet - email: james.gebbie@stfc.ac.uk + - given-names: Victor + family-names: Velasco-Berrelleza + email: v.velascoberrelleza@sheffield.ac.uk + affiliation: 'School of Mathematical and Physical Sciences, University of Sheffield, United Kingdom' + orcid: 'https://orcid.org/0000-0002-4809-6254' + - given-names: Harry + family-names: Swift + email: harry.swift@stfc.ac.uk affiliation: 'Scientific Computing Department, STFC Daresbury Laboratory, Warrington WA4 4AD, United Kingdom' - orcid: 'https://orcid.org/0000-0001-8271-3431' - - given-names: Sarah - family-names: Harris - email: sarah.harris@sheffield.ac.uk - affiliation: School of Mathematical and Physical Sciences, University of Sheffield, United Kingdom - orcid: 'https://orcid.org/0000-0002-2812-1651' + orcid: 'https://orcid.org/0009-0007-3323-753X' - given-names: Jas family-names: Kalayan email: jas.kalayan@stfc.ac.uk affiliation: 'Scientific Computing Department, STFC Daresbury Laboratory, Warrington WA4 4AD, United Kingdom' orcid: 'https://orcid.org/0000-0002-6833-1864' - - given-names: Sally - family-names: Madden - affiliation: 'UC Davis Genome Center and Department of Mathematics, University of California, Davis, CA 95616, USA.' - - given-names: Harry - family-names: Swift - email: harry.swift@stfc.ac.uk + - given-names: Sarah + family-names: Harris + email: sarah.harris@sheffield.ac.uk + affiliation: School of Mathematical and Physical Sciences, University of Sheffield, United Kingdom + orcid: 'https://orcid.org/0000-0002-2812-1651' + - given-names: James + family-names: Gebbie-Rayet + email: james.gebbie@stfc.ac.uk affiliation: 'Scientific Computing Department, STFC Daresbury Laboratory, Warrington WA4 4AD, United Kingdom' - orcid: 'https://orcid.org/0009-0007-3323-753X' - - given-names: Victor - family-names: Velasco-Berrelleza - email: v.velascoberrelleza@sheffield.ac.uk - affiliation: 'School of Mathematical and Physical Sciences, University of Sheffield, United Kingdom' - orcid: 'https://orcid.org/0000-0002-4809-6254' - - given-names: Dina - family-names: Zhabinskaya - email: dzhabinskaya@ucdavis.edu - affiliation: 'UC Davis Genome Center and Department of Mathematics, University of California, Davis, CA 95616, USA.' + orcid: 'https://orcid.org/0000-0001-8271-3431' repository-code: 'https://github.com/CCPBioSim/SIST' url: 'https://sist.readthedocs.io/en/latest/' From a395b574dcbbf078d87bd64e97a8659efb379f1e Mon Sep 17 00:00:00 2001 From: harryswift01 Date: Mon, 7 Sep 2026 13:31:51 +0100 Subject: [PATCH 3/3] chore: add contributors as authors within `pyproject.toml` --- pyproject.toml | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/pyproject.toml b/pyproject.toml index cfc4b6e..83c0c35 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,6 +10,17 @@ readme = "README.md" requires-python = ">=3.12" dependencies = [] +authors = [ + { name = "Craig Benham", email = "cjbenham@ucdavis.edu" }, + { name = "Dina Zhabinskaya", email = "dzhabinskaya@ucdavis.edu" }, + { name = "Sally Madden" }, + { name = "Richard M. Fye" }, + { name = "Victor Velasco-Berrelleza", email = "v.velascoberrelleza@sheffield.ac.uk" }, + { name = "Jas Kalayan", email = "jas.kalayan@stfc.ac.uk" }, + { name = "Sarah Harris", email = "sarah.harris@sheffield.ac.uk" }, + { name = "James Gebbie-Rayet", email = "james.gebbie@stfc.ac.uk" }, +] + maintainers = [ { name = "Harry Swift", email = "harry.swift@stfc.ac.uk" }, ]